| Record Information |
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| Version | 1.0 |
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| Creation Date | 2016-09-30 22:39:43 UTC |
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| Update Date | 2020-05-21 16:29:27 UTC |
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| BMDB ID | BMDB0001000 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | dUDP |
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| Description | dUDP belongs to the class of organic compounds known as pyrimidine 2'-deoxyribonucleoside diphosphates. These are pyrimidine nucleotides with a diphosphate group linked to the ribose moiety lacking a hydroxyl group at position 2. dUDP is an extremely weak basic (essentially neutral) compound (based on its pKa). dUDP exists in all eukaryotes, ranging from yeast to humans. |
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| Structure | |
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| Synonyms | | Value | Source |
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| 2'-Deoxyuridine 5'-diphosphate | ChEBI | | 2'-Deoxyuridine 5'-diphosphoric acid | Generator | | 2'-Deoxyuridine-5'-diphosphate | HMDB | | Deoxyuridine-diphosphate | HMDB | | 2'-Deoxyuridine 5'-(trihydrogen diphosphate) | HMDB | | 2’-Deoxyuridine 5’-(trihydrogen diphosphate) | HMDB | | 2’-Deoxyuridine 5’-diphosphate | HMDB | | Deoxyuridine 5'-diphosphate | HMDB | | Deoxyuridine 5’-diphosphate | HMDB | | Deoxyuridine diphosphate | HMDB | | dUDP | HMDB |
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| Chemical Formula | C9H14N2O11P2 |
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| Average Molecular Weight | 388.1618 |
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| Monoisotopic Molecular Weight | 388.007282324 |
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| IUPAC Name | [({[(2R,3S,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid |
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| Traditional Name | dUDP |
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| CAS Registry Number | 4208-67-7 |
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| SMILES | O[C@H]1C[C@@H](O[C@@H]1COP(O)(=O)OP(O)(O)=O)N1C=CC(=O)NC1=O |
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| InChI Identifier | InChI=1S/C9H14N2O11P2/c12-5-3-8(11-2-1-7(13)10-9(11)14)21-6(5)4-20-24(18,19)22-23(15,16)17/h1-2,5-6,8,12H,3-4H2,(H,18,19)(H,10,13,14)(H2,15,16,17)/t5-,6+,8+/m0/s1 |
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| InChI Key | QHWZTVCCBMIIKE-SHYZEUOFSA-N |
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| Chemical Taxonomy |
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| Description | belongs to the class of organic compounds known as pyrimidine 2'-deoxyribonucleoside diphosphates. These are pyrimidine nucleotides with a diphosphate group linked to the ribose moiety lacking a hydroxyl group at position 2. |
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| Kingdom | Organic compounds |
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| Super Class | Nucleosides, nucleotides, and analogues |
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| Class | Pyrimidine nucleotides |
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| Sub Class | Pyrimidine deoxyribonucleotides |
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| Direct Parent | Pyrimidine 2'-deoxyribonucleoside diphosphates |
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| Alternative Parents | |
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| Substituents | - Pyrimidine 2'-deoxyribonucleoside diphosphate
- Organic pyrophosphate
- Pyrimidone
- Monoalkyl phosphate
- Hydropyrimidine
- Organic phosphoric acid derivative
- Phosphoric acid ester
- Pyrimidine
- Alkyl phosphate
- Heteroaromatic compound
- Vinylogous amide
- Tetrahydrofuran
- Lactam
- Urea
- Secondary alcohol
- Oxacycle
- Azacycle
- Organoheterocyclic compound
- Hydrocarbon derivative
- Organooxygen compound
- Organonitrogen compound
- Organic oxide
- Organopnictogen compound
- Organic oxygen compound
- Alcohol
- Organic nitrogen compound
- Aromatic heteromonocyclic compound
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| Molecular Framework | Aromatic heteromonocyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Status | Expected but not Quantified |
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| Origin | |
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| Biofunction | Not Available |
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| Application | Not Available |
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| Cellular locations | - Cytoplasm
- Mitochondria
- Nucleus
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| Physical Properties |
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| State | Solid |
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| Experimental Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Predicted Properties | |
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| Spectra |
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| Spectra | |
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